Hello, first things first: Thank so much for this app! It's the only app for which I keep Wine installed. No other DB client even comes close in terms of comfort.
It would be cool though to be able to disable these prompts:
Whenever I write a query that I'm 100% going to use in the future, I save it right away into my project folder. For other queries I just keep them in auto-saved tabs and close them when they're not needed anymore. So for me, these dialogs are an unnecessary disruption.